Docs Getting Started With Nf Core

Docs Getting Started With Nf Core Run the tests for your pipeline in the terminal to confirm everything is working: nextflow run nf core <pipeline name> profile test,docker outdir <outdir>. replace <pipeline name> with the name of an nf core pipeline. if you don’t have docker installed, replace docker with either singularity or conda. Nf core tutorial. material originally written for the nextflow camp 2019, barcelona 2019 09 19: “getting started with nf core” (see programme). duration: 1hr 30min. updated for the nf core hackathon 2020, london 2020 03 (see event). updated for the elixir workshop on november 2021 (see event). updated during the march 2022 hackathon.

Docs Writing Nf Core Modules And Subworkflows Docs. how to use nf core pipelines and contribute to the nf core community. getting started. what is nf core and how to run a pipeline. adding modules to pipelines. quick reference of the steps needed to add a new module to a pipeline. nf test: example assertions. Free online training events for this course are run approximately every six months. videos are streamed to and questions are handled in the nf core slack community. you can watch the recording of the most recent training (march, 2024) in the playlist below: community foundational nextflow training session 1. Fundamentals training. this is the primary nextflow training material used in most nextflow and nf core training events. the fundamentals training material includes all things nextflow. perfect for anyone looking to get to grips with using nextflow to run analyses and build workflows. launch the fundamentals training. The nf core community provides a range of tools to help new users get to grips with nextflow both by providing complete pipelines that can be used out of the box, and also by helping developers with best practices. companion tools can create a bare bones pipeline from a template scattered with to do pointers and ci with linting tools check.

Getting Started With Nf Core Fundamentals training. this is the primary nextflow training material used in most nextflow and nf core training events. the fundamentals training material includes all things nextflow. perfect for anyone looking to get to grips with using nextflow to run analyses and build workflows. launch the fundamentals training. The nf core community provides a range of tools to help new users get to grips with nextflow both by providing complete pipelines that can be used out of the box, and also by helping developers with best practices. companion tools can create a bare bones pipeline from a template scattered with to do pointers and ci with linting tools check. If you use the conda package manager you can setup a new environment and install all dependencies for the new module workflow in one step with: install nextflow (>=21.04.0) install the latest version of nf core tools (>=2.7) install nf test. fork and clone the nf core modules repo locally. setup up pre commit (comes packaged with nf core tools. @nf core is a community effort to collect a curated set of analysis pipelines built using nextflow (@nextflow io). here's how to get started: 📚 see available pipelines on the website. 👩‍💻 check out the documentation. 🙋‍♀️ come and say hi on our slack! 🍿 tune in for talks and events, get involved!.